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Biocompendium Analytics

bioCompendium is a high-throughput experimental data...

by LCSB, Luxembourg and SBI, Tokyo

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Category
Analytics
OS
Universal
Release
01/28/2016
Version
1.0 beta
File size
4.2MB
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Website
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Description

bioCompendium is a high-throughput experimental data...


bioCompendium is a high-throughput experimental data analysis platform. The basic input to the system are one or more gene lists, which are typically the basis for an experiment or are the outcome of a wide range of experiments like gene expression analysis, RNAi screening results, proteomics experiments. It also facilitates the comparative analysis of experimental results coming from different animal models (‘cross species comparison’) and different biological domains. Based on these gene list(s) the system collects a wide spectrum of biological information for each of the genes like sequence and structure information, diseases associations, interacting drugs and chemicals, patents information, GO terms and the like. Furthermore additional analysis steps can be performed like the comparison of transcription factor binding site profiles. By using this information stock the system allows to analyze and compare different sets of experimental results or compare own experimental results to datasets published and deposited by other research groups. In addition the system can extract the gene-lists out of widely used document file formats (PDF, MS-Office, Raw text). The system is complemented by different clustering and enrichment methods and allows to visually inspecting the results using 2D and 3D visualization tools. Some of the typical questions to ask these datasets are: What pathways do I hit with my list? Are there any GO-terms overrepresented in my list? What drugs/chemicals are know to bind to my members of my list and could be used as tools in an experiment?

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Percellome

by Division of Toxicology, NIHS Japan and SBI, Tokyo

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Wed, 11/11/2015 - 17:20 UPDATE
This gadget provides the expression profiles...

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iPath

by iPath team and SBI, Tokyo

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Wed, 11/18/2015 - 18:11 UPDATE
Provides mapping of KEGG metabolites and pathways...

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EnrichNet

by LCSB, Luxembourg

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Fri, 01/09/2015 - 15:01 UPDATE
EnrichNet computes a network-based pathway enrichment...

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